{"name":"PoseR-napari","display_name":"PoseR","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"PoseR-napari.make_qwidget","title":"Make Poser Widget","python_name":"poser._widget:PoserWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"PoseR-napari.make_hparams","title":"Make hparams","python_name":"poser._loader:HyperParams","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"PoseR-napari.make_dataset","title":"Make dataset","python_name":"poser._loader:ZebData","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"PoseR-napari.make_qwidget","display_name":"PoseR","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"PoseR-napari","version":"0.0.1b3","dynamic":null,"platform":null,"supported_platform":null,"summary":"A deep learning toolbox for decoding animal behaviour","description":"# PoseR\n\n[![License BSD-3](https://img.shields.io/pypi/l/PoseR.svg?color=green)](https://github.com/pnm4sfix/PoseR/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/PoseR-napari.svg?color=green)](https://pypi.org/project/PoseR-napari)\n[![Python Version](https://img.shields.io/pypi/pyversions/PoseR-napari.svg?color=green)](https://python.org)\n[![tests](https://github.com/pnm4sfix/PoseR/workflows/tests/badge.svg)](https://github.com/pnm4sfix/PoseR/actions)\n[![codecov](https://codecov.io/gh/pnm4sfix/PoseR/branch/main/graph/badge.svg)](https://codecov.io/gh/pnm4sfix/PoseR)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/PoseR)](https://napari-hub.org/plugins/PoseR)\n\nA deep learning toolbox for decoding animal behaviour\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/stable/plugins/index.html\n-->\n![alt text](https://github.com/pnm4sfix/PoseR/blob/add-functionality/docs/logo.png?raw=true)\n\n## Installation\n\nCreate an anaconda environment:\n\n    conda create -n PoseR python=3.10\n\nActivate PoseR environment:\n\n    conda activate PoseR\n\nInstall CUDA if using NVIDIA GPU:\n\n    conda install -c \"nvidia/label/cuda-11.7.0\" cuda\n\nInstall Pytorch:\nFor GPU:\n\n    conda install pytorch torchvision torchaudio pytorch-cuda=11.7 -c pytorch -c nvidia\n\nFor CPU only version:\n\n    conda install pytorch torchvision torchaudio cpuonly -c pytorch\n    \nInstall napari:\n\n    pip install napari[\"all\"]\n\nYou can install `PoseR` via [pip]:\n\n    pip install PoseR-napari\n\n\n\nTo install latest development version :\n\n    pip install git+https://github.com/pnm4sfix/PoseR.git\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"PoseR\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/pnm4sfix/PoseR/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/pnm4sfix/PoseR","download_url":null,"author":"Pierce Mullen","author_email":"pnm1@st-andrews.ac.uk","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.10","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["numpy","magicgui","qtpy","napari","napari-video","napari-plot","tables","imageio-ffmpeg (==0.4.8)","pytorch-lightning","test-tube","scikit-learn","matplotlib","numba","networkx","seaborn","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'"],"requires_python":">=3.10","requires_external":null,"project_url":["Bug Tracker, https://github.com/pnm4sfix/PoseR/issues","Documentation, https://github.com/pnm4sfix/PoseR#README.md","Source Code, https://github.com/pnm4sfix/PoseR","User Support, https://github.com/pnm4sfix/PoseR/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}