{"name":"acquifer-napari","display_name":"acquifer-napari","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"acquifer-napari.get_reader","title":"Get Reader","python_name":"acquifer_napari_plugin._reader:napari_get_reader","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"acquifer-napari.get_reader","filename_patterns":["*"],"accepts_directories":true}],"writers":null,"widgets":null,"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"acquifer-napari","version":"0.0.2","dynamic":null,"platform":null,"supported_platform":null,"summary":"Loader plugin for napari, to load Acquifer Imaging Machine datasets in napari, using dask for efficient lazy data-loading.","description":"# acquifer-napari\n\nThe acquifer-napari plugin allows loading IM04 dataset directory, as multi-dimensional images in napari.  \nSliders for well, channel, time and Z are automatically rendered when there are more than 1 coordinates along the dimension.  \nThe plugin uses Dask-Image for efficient data-loading \"on request\" similar to the VirtualStack in ImageJ.  \n\n## Installation\nVia the napari plugin manager : acquifer-napari.\nOr with pip : `pip install acquifer-napari`.\n\nUse `pip install -e .` to install in developement mode, so any change in the source code is directly reflected.  \nUse `npe2 list` to check that the plugin is correctly installed and visible by napari.  \nFor instance here, the package defines 1 command, which is a reader.  \nOne could have more commands, which would be implement other types.   \nThis should output something like following \n┌──────────────────────────────┬─────────┬──────┬───────────────────────────────────────────────────────────┐\n│ Name                         │ Version │ Npe2 │ Contributions                                             │\n├──────────────────────────────┼─────────┼──────┼───────────────────────────────────────────────────────────┤\n│ acquifer-napari              │ 0.0.1   │ ✅   │ commands (1), readers (1)\n\nThe plugin should be installed in an environment with napari installed.  \nNapari can be started with the `napari`command in a command prompt with a system wide python installation.  \nOnce installed, napari can be opened in a IPython interactive session with\n\n```python\n>> import napari\n>> napari.Viewer()\n```\n\n## Configurations\nThe file `napari.yaml` in `acquifer_napari_plugin` defines what functions of the python package are visible to napari.  \nThe top level `name` field must be the same than the python package name defined in `setup.cfg`.\nIt first define a set of commands, which have a custom `id`, and a `python_name`, which is the actual location of the function in the python package (or module).  \nThen the napari.yaml has optional subsections `readers`, `writers`, `widget`, to reference some of the commands previously defined, to notify napari that they implemente those standard functions.  \nFor instance I first define a command myReader pointing to myPackage.myReader, and I reference that command using the id it in the section readers  \nSee https://napari.org/stable/plugins/first_plugin.html#add-a-napari-yaml-manifest  \n\n\n## Issues\nIf you encounter any problems, please [file an issue](https://github.com/Luxendo/acquifer-napari/issues) along with a detailed description.\n","description_content_type":"text/markdown","keywords":null,"home_page":null,"download_url":null,"author":"Laurent Thomas","author_email":null,"maintainer":null,"maintainer_email":null,"license":"GPL-3.0-only","classifier":["Framework :: napari","Topic :: Software Development :: Testing","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.7","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Operating System :: OS Independent","License :: OSI Approved :: GNU General Public License v3 (GPLv3)"],"requires_dist":["acquifer","napari","numpy","sortedcontainers","dask-image","xarray"],"requires_python":">=3.7","requires_external":null,"project_url":["HomePage, https://acquifer.de","Twitter, https://twitter.com/myacquifer","Bug Tracker, https://github.com/Luxendo/acquifer-napari/issues","Documentation, https://github.com/Luxendo/acquifer-napari#README.md","Source Code, https://github.com/Luxendo/acquifer-napari"],"provides_extra":null,"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}