{"name":"brainglobe-segmentation","display_name":"brainglobe-segmentation","visibility":"public","icon":"","categories":[],"schema_version":"0.1.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"brainglobe-segmentation.SegmentationWidget","title":"Open segmentation widget","python_name":"brainglobe_segmentation.segment:SegmentationWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"brainglobe-segmentation.SegmentationWidget","display_name":"Region/track segmentation","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"brainglobe-segmentation","version":"1.2.4","dynamic":null,"platform":null,"supported_platform":null,"summary":"Segmentation of anatomical structures in a common coordinate space","description":"[![Python Version](https://img.shields.io/pypi/pyversions/brainglobe-segmentation.svg)](https://pypi.org/project/brainglobe-segmentation)\n[![PyPI](https://img.shields.io/pypi/v/brainglobe-segmentation.svg)](https://pypi.org/project/brainglobe-segmentation)\n[![Wheel](https://img.shields.io/pypi/wheel/brainglobe-segmentation.svg)](https://pypi.org/project/brainglobe-segmentation)\n[![Development Status](https://img.shields.io/pypi/status/brainglobe-segmentation.svg)](https://github.com/brainglobe/brainglobe-segmentation)\n[![Tests](https://img.shields.io/github/actions/workflow/status/brainglobe/brainglobe-segmentation/test_and_deploy.yml?branch=main)](https://github.com/brainglobe/brainglobe-segmentation/actions)\n[![codecov](https://codecov.io/gh/brainglobe/brainglobe-segmentation/graph/badge.svg?token=WP9KTPZE5R)](https://codecov.io/gh/brainglobe/brainglobe-segmentation)\n[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/python/black)\n[![Twitter](https://img.shields.io/twitter/follow/brain_globe?style=social)](https://twitter.com/brain_globe)\n\n# brainglobe-segmentation\n\nSegmentation of anatomical structures in a common coordinate space\n\n## Installation\n**PyPI**\n```\npip install brainglobe-segmentation\n```\n\n**conda**\n```\nconda install -c conda-forge brainglobe-segmentation\n```\n\nN.B. Your data will need to be registered to an anatomical atlas first.\n## Usage\n\nSee [user guide](https://brainglobe.info/documentation/brainglobe-segmentation/index.html).\n\nIf you have any questions, head over to the [image.sc forum](https://forum.image.sc/tag/brainglobe).\n\n## Contributing\n\nContributions are very welcome. Please see the [developers guide](https://brainglobe.info/community/developers/index.html).\n\n### Citing brainglobe-segmentation\n\nIf you find brainglobe-segmentation useful, and use it in your research, please let us know and also cite the paper:\n\n> Tyson, A. L., V&eacute;lez-Fort, M.,  Rousseau, C. V., Cossell, L., Tsitoura, C., Lenzi, S. C., Obenhaus, H. A., Claudi, F., Branco, T.,  Margrie, T. W. (2022). Accurate determination of marker location within whole-brain microscopy images. Scientific Reports, 12, 867 [doi.org/10.1038/s41598-021-04676-9](https://doi.org/10.1038/s41598-021-04676-9)\n","description_content_type":"text/markdown","keywords":null,"home_page":null,"download_url":null,"author":null,"author_email":"\"Adam Tyson, Horst Obenhaus\" <code@adamltyson.com>","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 4 - Beta","Framework :: napari","Intended Audience :: Developers","Intended Audience :: Science/Research","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.11"],"requires_dist":["brainglobe-atlasapi >=2.0.1","brainglobe-napari-io >=0.3.0","brainglobe-utils >=0.5.0","napari >=0.4.5","numpy","pandas[hdf5]","qtpy","scikit-image","scipy","tifffile","black ; extra == 'dev'","gitpython ; extra == 'dev'","pre-commit ; extra == 'dev'","pytest ; extra == 'dev'","coverage ; extra == 'dev'","pytest-cov ; extra == 'dev'","pytest-qt ; extra == 'dev'","napari-time-slicer ; extra == 'dev'"],"requires_python":">=3.9","requires_external":null,"project_url":["Homepage, https://brainglobe.info/","Source Code, https://github.com/brainglobe/brainglobe-segmentation","Bug Tracker, https://github.com/brainglobe/brainglobe-segmentation/issues","Documentation, https://brainglobe.info/documentation/brainglobe-segmentation/index.html","User Support, https://forum.image.sc/tag/brainglobe"],"provides_extra":["dev"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}