{"name":"disease-classifier","display_name":"Disease classifier","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"disease-classifier.make_qwidget","title":"iPAC disease classifier","python_name":"disease_classifier._widget:Disease_classifier","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"disease-classifier.make_qwidget","display_name":"iPAC disease classifier","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"disease-classifier","version":"0.0.1","dynamic":null,"platform":null,"supported_platform":null,"summary":"A disease classifier based on iPAC images.","description":"# disease-classifier\n\n[![License](https://img.shields.io/pypi/l/disease-classifier.svg?color=green)](https://github.com/zcqwh/disease-classifier/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/disease-classifier.svg?color=green)](https://pypi.org/project/disease-classifier)\n[![Python Version](https://img.shields.io/pypi/pyversions/disease-classifier.svg?color=green)](https://python.org)\n[![tests](https://github.com/zcqwh/disease-classifier/workflows/tests/badge.svg)](https://github.com/zcqwh/disease-classifier/actions)\n[![codecov](https://codecov.io/gh/zcqwh/disease-classifier/branch/main/graph/badge.svg)](https://codecov.io/gh/zcqwh/disease-classifier)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/disease-classifier)](https://napari-hub.org/plugins/disease-classifier)\n\nA napari plugin for disease classification based on iPAC images.\n\n\n\n## Installation\n\nYou can install `disease-classifier` via [pip]:\n\n    pip install disease-classifier\n\n\n\nTo install latest development version :\n\n    pip install git+https://github.com/zcqwh/disease-classifier.git\n\n## Introduction\n#### Load data (.rtdc or .bin)\n* Drag and drop the data in .rtdc or .bin into the files table.\n* Click eye button to preview images.\n![](https://github.com/zcqwh/disease-classifier/blob/main/Tutorial/Gif/01_Load_preview.gif?raw=true)\n\n\n#### Choose model and classify\n\n* Choose the model folder including CNN and RF/PLDA.\n* Check the data.\n* Click classify.\n![](https://github.com/zcqwh/disease-classifier/blob/main/Tutorial/Gif/02_model_classify.gif?raw=true)\n\n#### Preview classification results\n* Click the eye button to preview the result.\n* Click the header to show all.\n![](https://github.com/zcqwh/disease-classifier/blob/main/Tutorial/Gif/03_preview_result.gif?raw=true)\n\n\n#### Save results\n* Click “Add classification to .rtdc file” button to save results.\n![](https://github.com/zcqwh/disease-classifier/blob/main/Tutorial/Gif/04_save.gif?raw=true)\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"disease-classifier\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/plugins/stable/index.html\n-->\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/zcqwh/disease-classifier/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/zcqwh/disease-classifier","download_url":null,"author":"Chenqi Zhang","author_email":"cqzhang@g.ecc.u-tokyo.ac.jp","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 2 - Pre-Alpha","Intended Audience :: Developers","Framework :: napari","Topic :: Software Development :: Testing","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Operating System :: OS Independent","License :: OSI Approved :: BSD License"],"requires_dist":["numpy","magicgui","qtpy","matplotlib","h5py (>=3.6.0)","napari (>=0.4.15)","numpy (>=1.22.4)","opencv-contrib-python-headless (>=4.5.5.64)","pytranskit (>=0.2.3)","statsmodels (>=0.13.2)","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/zcqwh/disease-classifier/issues","Documentation, https://github.com/zcqwh/disease-classifier#README.md","Source Code, https://github.com/zcqwh/disease-classifier","User Support, https://github.com/zcqwh/disease-classifier/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}