{"name":"imaxt-multiscale-plugin","display_name":"IMAXT Multiscale Image Napari Plugin","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"imaxt-multiscale-plugin.get_reader","title":"Open data with IMAXT Multiscale Image Napari Plugin","python_name":"imaxt_multiscale_plugin._reader:napari_get_reader","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"imaxt-multiscale-plugin.write_multiple","title":"Save multi-layer data with IMAXT Multiscale Image Napari Plugin","python_name":"imaxt_multiscale_plugin._writer:write_multiple","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"imaxt-multiscale-plugin.write_single_image","title":"Save image data with IMAXT Multiscale Image Napari Plugin","python_name":"imaxt_multiscale_plugin._writer:write_single_image","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"imaxt-multiscale-plugin.write_screenshot","title":"Save Screenshot","python_name":"imaxt_multiscale_plugin._writer:write_screenshot","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"imaxt-multiscale-plugin.make_qwidget","title":"Utilities Widget","python_name":"imaxt_multiscale_plugin._widget:UtilsQWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"imaxt-multiscale-plugin.get_reader","filename_patterns":["*"],"accepts_directories":true}],"writers":[{"command":"imaxt-multiscale-plugin.write_single_image","layer_types":["image"],"filename_extensions":[".npy"],"display_name":""},{"command":"imaxt-multiscale-plugin.write_screenshot","layer_types":["image*","labels*"],"filename_extensions":[".tif",".tiff"],"display_name":""}],"widgets":[{"command":"imaxt-multiscale-plugin.make_qwidget","display_name":"Utilities Widget","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"imaxt-multiscale-plugin","version":"0.3.1","dynamic":null,"platform":null,"supported_platform":null,"summary":"A simple plugin to use with napari","description":"# IMAXT multiscale napari plugin\n\n[![License GNU LGPL v3.0](https://img.shields.io/pypi/l/imaxt-multiscale-plugin.svg?color=green)](https://github.com/eg266/imaxt-multiscale-plugin/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/imaxt-multiscale-plugin.svg?color=green)](https://pypi.org/project/imaxt-multiscale-plugin)\n[![Python Version](https://img.shields.io/pypi/pyversions/imaxt-multiscale-plugin.svg?color=green)](https://python.org)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/imaxt-multiscale-plugin)](https://napari-hub.org/plugins/imaxt-multiscale-plugin)\n\nA napari plugin to visualize multi-resolution images created with the IMAXT mosaic pipeline.\n\n----------------------------------------------------\n\n## Installation\n\nYou can install `imaxt-multiscale-plugin` via [pip]:\n\n    pip install imaxt-multiscale-plugin\n\n\n## Usage\n\nRun [napari] with the name of the sample to visualize either a local path:\n\n    napari /storage/imaxt/eglez/processed/stpt/20220606_PDX_AB559_GFP_005503_100x15um\n\nor a sample in S3 storage:\n\n    napari s3://imaxtgw/stpt/20220608_DI_PDX_SA535_Tum_5223_04280_100x15um\n    \n## Screenshots\n\n![Alt text](https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin/-/raw/main/assets/napari1.png \"a title\")\n![Alt text](https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin/-/raw/main/assets/napari2.png \"a title\")\n![Alt text](https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin/-/raw/main/assets/napari3.png \"a title\")\n![Alt text](https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin/-/raw/main/assets/napari4.png \"a title\")\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [GNU LGPL v3.0] license,\n\"imaxt-multiscale-plugin\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://gitlab.developers.cam.ac.uk/astronomy/camcead/imaxt/imaxt-multiscale-plugin","download_url":null,"author":"Eduardo Gonzalez Solares","author_email":"E.GonzalezSolares@ast.cam.ac.uk","maintainer":null,"maintainer_email":null,"license":"LGPL-3.0-only","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Software Development :: Testing"],"requires_dist":["numpy","magicgui","qtpy","xarray","dask","astropy","zarr","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":null,"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}