{"name":"napari-bil-data-viewer","display_name":"napari-bil-data-viewer","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-bil-data-viewer.napari_get_reader","title":"napari_get_reader","python_name":"napari_bil_data_viewer.reader:napari_get_reader","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"napari-bil-data-viewer.napari_get_reader","filename_patterns":["*"],"accepts_directories":true}],"writers":null,"widgets":[{"command":"napari-bil-data-viewer.LoadCuratedDatasets","display_name":"LoadCuratedDatasets","autogenerate":false},{"command":"napari-bil-data-viewer.LoadImageStackFromURL","display_name":"LoadImageStackFromURL","autogenerate":false},{"command":"napari-bil-data-viewer.LoadMultiscaleDataFromURL","display_name":"LoadMultiscaleDataFromURL","autogenerate":false},{"command":"napari-bil-data-viewer.LoadNeuronMorphologyFromURL","display_name":"LoadNeuronMorphologyFromURL","autogenerate":false},{"command":"napari-bil-data-viewer.LayerScaleControls","display_name":"LayerScaleControls","autogenerate":false},{"command":"napari-bil-data-viewer.LoadHistologyImageFromURL","display_name":"LoadHistologyImageFromURL","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-bil-data-viewer","version":"0.6.0","dynamic":null,"platform":null,"supported_platform":null,"summary":"Napari plugin for viewing Brain Image Library datasets","description":"<p href=\"https://www.brainimagelibrary.org/\">\n    <align=\"center\" width=\"100%\">\n    <img width=\"100%\" src=\"https://i.imgur.com/ljZKq8h.png\">\n</p>\n\n\n# Description\n\nView datasets archived at the **[Brain Image Library](https://www.brainimagelibrary.org/)**.\n\n**NOTE: This plugin is under early development.  Currently, only a subset of single-channel, fMOST datasets which include projections are available to view.  An example can be found [here]( https://download.brainimagelibrary.org/2b/da/2bdaf9e66a246844/mouseID_405429-182725/).\n\n\n\n![Plugin Demo GIF](https://imgur.com/gkDCsMd.gif \"Plugin Demo GIF\")\n\n\n\n### Features\n\n* Multiscale Rendering\n  * In datasets that include multiple resolution representations of the data, each resolution can be combined to improve the speed of browsing and user experience.  An example of a dataset with multiple resolution projections can be found [here](https://download.brainimagelibrary.org/2b/da/2bdaf9e66a246844/mouseID_405429-182725/).\n  * All datasets included in the current release of napari-bil-data-viewer use multi-resolution datasets.\n* 3D rendering of whole datasets.  The lowest resolution is used for rendering.  Currently, this is a limitation imposed by napari.\n* The plugin does NOT require a BIL account as datasets are already accessible via https.\n\n### Known Issues / limitations\n* Currently the only datasets that are available are those which have been manually selected by the developers.  If you would like a specific dataset to be included please consider adding the dataset(s) to the [dataset_info.py](https://github.com/brain-image-library/napari-bil-data-viewer/blob/main/napari_bil_data_viewer/dataset_info.py) file and submitting a pull request.\n* To inquire about this plugin please contact Brain Image Library support:  bil-support@psc.edu\n* The plugin is still under development.  We appreciate all [reports of issues / errors](https://github.com/brain-image-library/napari-bil-data-viewer/issues) which occur during use.\n\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using with [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/docs/plugins/index.html\n-->\n\n## Installation\n\nOption #1: Install plugin via the napari plugin menu\n\n1. Menu: Plugins >> Install/Uninstall Plugins\n2. Search: napari-bil-data-viewer\n3. Select install\n\nOption #2:  Install a fresh python virtual environment\n\n```bash\n# Example of venv creation using conda\nconda create -y -n bil-viewer python=3.8\nconda activate bil-viewer\n\n# Install napari-bil-data-viewer\npip install napari-bil-data-viewer\n\n# Run Napari\nnapari\n```\n\n## Contributing\n\nPlease consider contributing to this project!  Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-bil-data-viewer\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/brain-image-library/napari-bil-data-viewer/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n\n## Change Log:\n\n##### <u>v0.1.0:</u>\n\nInitial release.\n\n<u>**v0.1.1 & v0.1.2:**</u>\n\nChanges to documentation\n\n<u>**v0.1.3:**</u>\n\nAdded all available summary fMOST datasets\n\n<u>**v0.2.0:**</u>\n\nAdded support for SWC neuron tracings\n\n<u>**v0.3.0:**</u>\n\nAdded support for multiscale OME zarr data\n\n<u>**v0.4.0:**</u>\n\nAdd scale controls for layers\n\n<u>**v0.4.2:**</u>\n\nAdd URL input to visualize image stacks (tif, tiff, jp2)\n\n<u>**v0.5.0:**</u>\n\nSplit the plugin into 5 widgets:<br/>\n- Load Curated Datasets\n- Load Image Stack From URL\n- Load Multiscale Data From URL\n- Load Neuron Morphology From URL\n- Layer Scale Controls\n\n<u>**v0.5.1:**</u>\n\nAdd metadata link to curated datasets\n\n<u>**v0.6.0:**</u>\n\nAdd widget to visualize histology RGB tiffs\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/brain-image-library/napari-bil-data-viewer","download_url":null,"author":"Alan M Watson","author_email":"alan.watson@pitt.edu","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 2 - Pre-Alpha","Intended Audience :: Developers","Framework :: napari","Topic :: Software Development :: Testing","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Operating System :: OS Independent","License :: OSI Approved :: BSD License"],"requires_dist":["napari[all]","napari-plugin-engine >=0.1.4","scikit-image","fsspec","requests","aiohttp","imagecodecs","beautifulsoup4","dask","neurom ==3.2.2","napari-ome-zarr ==0.5.2"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/brain-image-library/napari-bil-data-viewer/issues","Documentation, https://github.com/brain-image-library/napari-bil-data-viewer#README.md","Source Code, https://github.com/brain-image-library/napari-bil-data-viewer","User Support, https://github.com/brain-image-library/napari-bil-data-viewer"],"provides_extra":null,"provides_dist":null,"obsoletes_dist":null},"npe1_shim":true}