{"name":"napari-blossom","display_name":"Blossom","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-blossom.get_reader","title":"Open data with Blossom","python_name":"napari_blossom._reader:napari_get_reader","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-blossom.write_multiple","title":"Save multi-layer data with Blossom","python_name":"napari_blossom._writer:write_multiple","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-blossom.write_single_image","title":"Save image data with Blossom","python_name":"napari_blossom._writer:write_single_image","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-blossom.make_sample_data","title":"Load sample data from Blossom","python_name":"napari_blossom._sample_data:make_sample_data","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-blossom.model_segmentation","title":"Model segmentation","python_name":"napari_blossom._widget:do_model_segmentation","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-blossom.save_as_zip","title":"Save zip","python_name":"napari_blossom._widget:save_as_zip","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"napari-blossom.get_reader","filename_patterns":["*.npy"],"accepts_directories":false}],"writers":[{"command":"napari-blossom.write_multiple","layer_types":["image*","labels*"],"filename_extensions":[],"display_name":""},{"command":"napari-blossom.write_single_image","layer_types":["image"],"filename_extensions":[".npy"],"display_name":""}],"widgets":[{"command":"napari-blossom.model_segmentation","display_name":"Segmentation","autogenerate":false},{"command":"napari-blossom.save_as_zip","display_name":"Save zip","autogenerate":false}],"sample_data":[{"command":"napari-blossom.make_sample_data","key":"unique_id.1","display_name":"Blossom"}],"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-blossom","version":"0.1.6","dynamic":null,"platform":null,"supported_platform":null,"summary":"Segmentation of blossom apple tree images","description":"# napari-blossom\n\n[![License BSD-3](https://img.shields.io/pypi/l/napari-blossom.svg?color=green)](https://github.com/hereariim/napari-blossom/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-blossom.svg?color=green)](https://pypi.org/project/napari-blossom)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-blossom.svg?color=green)](https://python.org)\n[![tests](https://github.com/hereariim/napari-blossom/workflows/tests/badge.svg)](https://github.com/hereariim/napari-blossom/actions)\n[![codecov](https://codecov.io/gh/hereariim/napari-blossom/branch/main/graph/badge.svg)](https://codecov.io/gh/hereariim/napari-blossom)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-blossom)](https://napari-hub.org/plugins/napari-blossom)\n\nSegmentation of blossom apple tree images\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/plugins/index.html\n-->\n\nThis plugin was written by Herearii Metuarea, student intern at LARIS (French laboratory located in Angers, France) in Imhorphen, french scientific team lead by David Rousseau (Full professor). This plugin was designed as part of the european project INVITE.\n\n<img width=\"86\" alt=\"Logo-IRHS-h_2022_png_large\" src=\"https://github.com/hereariim/napari-blossom/assets/93375163/750bbd60-ef3e-4148-9cbd-8a32e11252a4\"> ![Logo-INRAE](https://github.com/hereariim/napari-blossom/assets/93375163/d7cc95a1-f09c-4430-8ac8-8962c1046767) ![logo2](https://github.com/hereariim/napari-blossom/assets/93375163/3b41c838-acc8-49a3-81f8-46d1305f43d3) ![logolaris1](https://github.com/hereariim/napari-blossom/assets/93375163/bf92a903-5810-4c43-aa28-573f96f64ff9) ![logo1](https://github.com/hereariim/napari-blossom/assets/93375163/f9361560-dd4f-49f4-955d-ffe41b5c014d)\n\n## Installation\n\nYou can install `napari-blossom` via [pip]:\n\n    pip install napari-blossom\n\nTo install latest development version :\n\n    pip install git+https://github.com/hereariim/napari-blossom.git\n\n## How does it works\n\nThis module offers a plugin that allows you to segment the images of the apple tree flowers. As input, you can enter a **single image** with the image selection widget. Once the image is entered in the napari window, you can segment the apple blossoms with the image segmentation widget by running the run button. The segmented image will appear in the napari window.\n\n![Capture d'écran 2024-04-24 120758](https://github.com/hereariim/napari-blossom/assets/93375163/4f0c6ac7-b3a8-4849-9c5c-0ff5f35c8362)\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-blossom\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/hereariim/napari-blossom/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/hereariim/napari-blossom","download_url":null,"author":"Herearii Metuarea","author_email":"herearii.metuarea@gmail.com","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Software Development :: Testing"],"requires_dist":["numpy >=1.23.0","magicgui >=0.6.1","qtpy","opencv-python-headless >=4.7.0.68","tensorflow >=2.11.0","scikit-image >=0.19.3","napari","focal-loss >=0.0.7","pillow >=9.3.0","tqdm >=4.64.1","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/hereariim/napari-blossom/issues","Documentation, https://github.com/hereariim/napari-blossom#README.md","Source Code, https://github.com/hereariim/napari-blossom","User Support, https://github.com/hereariim/napari-blossom/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}