{"name":"napari-correct-drift","display_name":"Napari Correct Drift","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-correct-drift.sample_2d","title":"Sample Data 2D","python_name":"napari_correct_drift._sample_data:sample_2d","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-correct-drift.sample_3d","title":"Sample Data 3D","python_name":"napari_correct_drift._sample_data:sample_3d","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-correct-drift.sample_3d_ch","title":"Sample Data 3D + Channel","python_name":"napari_correct_drift._sample_data:sample_3d_ch","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-correct-drift.make_qwidget","title":"Make CorrectDriftDock QWidget","python_name":"napari_correct_drift._widget:CorrectDriftDock","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-correct-drift.make_qwidget","display_name":"Napari Correct Drift","autogenerate":false}],"sample_data":[{"command":"napari-correct-drift.sample_2d","key":"unique_id.0","display_name":"Synthetic Drift 2D"},{"command":"napari-correct-drift.sample_3d","key":"unique_id.1","display_name":"Synthetic Drift 3D"},{"command":"napari-correct-drift.sample_3d_ch","key":"unique_id.2","display_name":"Synthetic Drift 2D + Channel"}],"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-correct-drift","version":"0.4.0","dynamic":null,"platform":null,"supported_platform":null,"summary":"Drift correction 2D/3D for Napari similar to Fijis Correct 3D drift macro","description":"# napari-correct-drift\n\n[![License BSD-3](https://img.shields.io/pypi/l/napari-correct-drift.svg?color=green)](https://github.com/sommerc/napari-correct-drift/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-correct-drift.svg?color=green)](https://pypi.org/project/napari-correct-drift)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-correct-drift.svg?color=green)](https://python.org)\n[![tests](https://github.com/sommerc/napari-correct-drift/workflows/tests/badge.svg)](https://github.com/sommerc/napari-correct-drift/actions)\n[![codecov](https://codecov.io/gh/sommerc/napari-correct-drift/branch/main/graph/badge.svg)](https://codecov.io/gh/sommerc/napari-correct-drift)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-correct-drift)](https://napari-hub.org/plugins/napari-correct-drift)\n[![Documentation Status](https://readthedocs.org/projects/napari-correct-drift/badge/?version=latest)](https://napari-correct-drift.readthedocs.io/en/latest/?badge=latest)\n\nNapari-correct-drift brings the functionality of Fiji’s popular Correct-3D-drift macro to Napari for flexible and efficient correction of stage and sample drift common in time-lapse microscopy.\n\nNapari-correct-drift supports drift correction for 2D/3D multi-channel data.\n\n----------------------------------\n## Example\n\nhttps://user-images.githubusercontent.com/895863/235100349-83379350-06a5-4fe7-9323-f3e5771cca2e.mp4\n\n\n## Test data\nNapari-correct-drift contains synthetic sample data. To test it on real data download an example Arabidopsis growing [root tip](https://seafile.ist.ac.at/f/b05362d4f358430c8c59/?dl=1) file.\n\n## Installation\n\nYou can install `napari-correct-drift` via [pip]:\n\n    pip install napari-correct-drift\n\nTo install latest development version :\n\n    pip install git+https://github.com/sommerc/napari-correct-drift.git\n\n## Roadmap\n\n- [x] Basic CorrectDrift interface\n- [x] Synthetic test data\n- [x] Unit tests\n- [x] 2D/3D multi-channel support\n- [x] ROI support (rectangles)\n- [x] Saving and loading of drift tables\n- [x] Outlier handling\n- [x] Sphinx documentation\n- [x] How-tos\n- [x] Tutorials and Guides\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-correct-drift\" is free and open source software\n\n### Acknowledgment\nThis project has been made possible in part by grant number NP2-0000000051 from the napari Plugin Foundations Grants (Cycle 2).\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/sommerc/napari-correct-drift","download_url":null,"author":"Christoph Sommer","author_email":"christoph.sommer@ist.ac.at","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["napari","numpy","qtpy","pandas","scikit-image","scipy","dask","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/sommerc/napari-correct-drift/issues","Documentation, https://github.com/sommerc/napari-correct-drift#README.md","Source Code, https://github.com/sommerc/napari-correct-drift","User Support, https://github.com/sommerc/napari-correct-drift/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}