{"name":"napari-cosmos-ts","display_name":"napari-cosmos-ts","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-cosmos-ts.main_widget","title":"Colocalization Single-Molecule Time Series","python_name":"napari_cosmos_ts.main_widget:MainWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-cosmos-ts.main_widget","display_name":"Colocalization Single-Molecule Time Series","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-cosmos-ts","version":"0.1.4","dynamic":null,"platform":null,"supported_platform":null,"summary":"napari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS) analysis","description":"# napari-cosmos-ts\n[napari](https://napari.org/stable/) plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS) analysis.\n\n# Install\n1. Install the `conda` package manager. Simplest is to download [Miniconda](https://docs.conda.io/en/main/miniconda.html) and run the installer.\n2. Create a virtual python environment named `napari-env` (or name it whatever you want) in which to install [napari](https://napari.org/stable/) and this plugin. In a command shell or terminal run the following command:\n```shell\nconda create --name napari-env python\n```\n3. Activate your virtual environment. *!!! Note you will have to do this every time you open a new command shell or terminal.* In a command shell or terminal run the following command:\n```shell\nconda activate napari-env\n```\n4. Install `napari` and `napari-cosmos-ts` into your virtual environment. In a command shell or terminal *where you have activated your virtual environment* run the following command:\n```shell\npip install \"napari[all]\" napari-cosmos-ts\n```\nOr for the latest version of `napari-cosmos-ts`:\n```shell\npip install \"napari[all]\" napari-cosmos-ts@git+https://github.com/marcel-goldschen-ohm/napari-cosmos-ts\n```\n\n# Run\n1. Activate your virtual environment (see [Install](#install), replace napari-env with the name of your environment). In a command shell or terminal run the following command:\n```shell\nconda activate napari-env\n```\n2. Launch the `napari` viewer. In a command shell or terminal *where you have activated your virtual environment* run the following command:\n```shell\nnapari\n```\n3. Launch the `napari-cosmos-ts` plugin. From the napari viewer `Plugins menu`, select `Colocalization Single-Molecule Time Series (napari-cosmos-ts)`. This should bring up a docked widget within the viewer. **Now you are good to go!**\n\n# User Guide\n:construction:","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/marcel-goldschen-ohm/napari-cosmos-ts","download_url":null,"author":"Marcel Goldschen-Ohm","author_email":"Marcel Goldschen-Ohm <goldschen-ohm@utexas.edu>","maintainer":null,"maintainer_email":null,"license":"MIT","classifier":["Development Status :: 3 - Alpha","Intended Audience :: Science/Research","License :: OSI Approved :: MIT License","Framework :: napari","Programming Language :: Python :: 3 :: Only"],"requires_dist":["napari>=0.4.19.post1","pyqtgraph>=0.13.4","pystackreg>=0.2.7","pycpd>=2.0.0"],"requires_python":">=3.10","requires_external":null,"project_url":["Homepage, https://github.com/marcel-goldschen-ohm/napari-cosmos-ts","Repository, https://github.com/marcel-goldschen-ohm/napari-cosmos-ts"],"provides_extra":null,"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}