{"name":"napari-deepmeta","display_name":"napari DeepMeta","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-deepmeta.make_qwidget","title":"DeepmetaWidget","python_name":"napari_deepmeta._widget:DeepmetaWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-deepmeta.make_qwidget2","title":"DeepmetaDemoWidget","python_name":"napari_deepmeta._widget:DeepmetaDemoWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-deepmeta.make_qwidget","display_name":"DeepmetaWidget","autogenerate":false},{"command":"napari-deepmeta.make_qwidget2","display_name":"DeepmetaDemoWidget","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-deepmeta","version":"2.1","dynamic":null,"platform":null,"supported_platform":null,"summary":"Mice lungs and metastases segmentation tool.","description":"# napari-deepmeta\n\n[![License MIT](https://img.shields.io/pypi/l/napari-deepmeta.svg?color=green)](https://github.com/EdgarLefevre/napari-deepmeta/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-deepmeta.svg?color=green)](https://pypi.org/project/napari-deepmeta)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-deepmeta.svg?color=green)](https://python.org)\n[![tests](https://github.com/EdgarLefevre/napari-deepmeta/workflows/tests/badge.svg)](https://github.com/EdgarLefevre/napari-deepmeta/actions)\n[![codecov](https://codecov.io/gh/EdgarLefevre/napari-deepmeta/branch/main/graph/badge.svg)](https://codecov.io/gh/EdgarLefevre/napari-deepmeta)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-deepmeta)](https://napari-hub.org/plugins/napari-deepmeta)\n\nMice lungs and metastases segmentation tool.\nThis tool is a demo tool for DeepMeta network.\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n## Installation\n\nYou can install `napari-deepmeta` via [pip]:\n\n    pip install napari-deepmeta\n\n\n\nTo install latest development version :\n\n    pip install git+https://github.com/EdgarLefevre/napari-deepmeta.git\n\n\n## Usage\n\nThis plugin is designed to process your mouse MRI images with our dataset. It comes with a demo, including one of our\ntest images.\n\nBy opening the deepmeta demo plugin, you will see an interface with one unique button, by clicking on it, it will load an image,\nrun prediction and then draw the masks contours on each slice.\n\nIf you open the deepmeta plugin, you will see an interface with one button and 3 checkboxes.\nBy checking the checkboxes, you add steps to the pipeline (enhance contrast, do postprocessing, segment metastases).\nOnce everything is setup, just click on the button and wait (the waiting time depends on your computer performance.)\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [MIT] license,\n\"napari-deepmeta\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/EdgarLefevre/napari-deepmeta/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/EdgarLefevre/napari-deepmeta","download_url":null,"author":"Edgar Lefevre","author_email":"lefevreedg@gmail.com","maintainer":null,"maintainer_email":null,"license":"MIT","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: MIT License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Software Development :: Testing"],"requires_dist":["connected-components-3d","magicgui","napari","numpy","opencv-python","qtpy","scikit-image","torch","connected-components-3d ; extra == 'testing'","napari ; extra == 'testing'","opencv-python ; extra == 'testing'","pyqt5 ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","tox ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/EdgarLefevre/napari-deepmeta/issues","Documentation, https://github.com/EdgarLefevre/napari-deepmeta#README.md","Source Code, https://github.com/EdgarLefevre/napari-deepmeta","User Support, https://github.com/EdgarLefevre/napari-deepmeta/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}