{"name":"napari-filament-annotator","display_name":"napari 3D filament annotator","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-filament-annotator.load_sample_image","title":"Load sample data for napari 3D filament annotator","python_name":"napari_filament_annotator._sample_data:load_sample_image","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-filament-annotator.make_annotator_widget","title":"Make Annotator Widget","python_name":"napari_filament_annotator._widget:AnnotatorWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-filament-annotator.make_annotator_widget","display_name":"3D Filament Annotator","autogenerate":false}],"sample_data":[{"command":"napari-filament-annotator.load_sample_image","key":"napari.sample_filament_image_3d","display_name":"Sample Image"}],"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-filament-annotator","version":"0.1.2","dynamic":null,"platform":null,"supported_platform":null,"summary":"Annotation of filaments / curvilinear structures in 3D","description":"# 3D Filament Annotator\n\n[![DOI](https://zenodo.org/badge/513980347.svg)](https://zenodo.org/badge/latestdoi/513980347)\n[![License Apache Software License 2.0](https://img.shields.io/pypi/l/napari-filament-annotator.svg?color=green)](https://github.com/amedyukhina/napari-filament-annotator/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-filament-annotator.svg?color=green)](https://pypi.org/project/napari-filament-annotator)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-filament-annotator.svg?color=green)](https://python.org)\n[![tests](https://github.com/amedyukhina/napari-filament-annotator/workflows/tests/badge.svg)](https://github.com/amedyukhina/napari-filament-annotator/actions)\n[![codecov](https://codecov.io/gh/amedyukhina/napari-filament-annotator/branch/main/graph/badge.svg)](https://codecov.io/gh/amedyukhina/napari-filament-annotator)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-filament-annotator)](https://napari-hub.org/plugins/napari-filament-annotator)\n\n3D Filament Annotator is a tool for annotating filaments and other curvilinear structures in 3D. \nThe 3D annotation is done by annotating the filament in two different projections, \ncalculating intersection, and refining the filament position with active contours.\n\n![demo](https://raw.githubusercontent.com/amedyukhina/napari-filament-annotator/main/docs/demo_09.gif)\n\n\n## Installation\n\n### Install napari\n\n    pip install napari[all]\n\n### Install the filament annotator\n\n<!--\nYou can install `napari-filament-annotator` via [pip]:\n\n    pip install napari-filament-annotator\n\n\nTo install latest development version :\n-->\n    pip install git+https://github.com/amedyukhina/napari-filament-annotator.git\n\n## Usage\n\nFor detailed usage instructions, please refer to the [usage tutorial](docs/tutorial.md).\n\n## Contributing\n\nContributions are very welcome both with regard to plugin functionality, and\ntips on using it and setting parameters. \n\nTests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [Apache Software License 2.0] license,\n\"napari-filament-annotator\" is free and open source software\n\n## Dependencies\n\n- [napari](https://github.com/napari/napari)\n- [scikit-image](https://scikit-image.org/)\n- [scikit-learn](https://github.com/scikit-learn/scikit-learn)\n- [NetworkX](https://networkx.org/documentation/stable/index.html)\n- [Geometry3D](https://github.com/GouMinghao/Geometry3D)\n\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/plugins/index.html\n-->\n\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/amedyukhina/napari-filament-annotator/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/amedyukhina/napari-filament-annotator","download_url":null,"author":"Anna Medyukhina","author_email":"anna.medyukhina@gmail.com","maintainer":null,"maintainer_email":null,"license":"Apache-2.0","classifier":["Development Status :: 3 - Alpha","Framework :: napari","Intended Audience :: Science/Research","License :: OSI Approved :: Apache Software License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["Geometry3D","networkx","numpy","magicgui","pandas","qtpy","scipy","sklearn","imageio (!=2.22.1)","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/amedyukhina/napari-filament-annotator/issues","Documentation, https://github.com/amedyukhina/napari-filament-annotator#README.md","Source Code, https://github.com/amedyukhina/napari-filament-annotator","User Support, https://github.com/amedyukhina/napari-filament-annotator/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}