{"name":"napari-imc","display_name":"napari-imc","visibility":"public","icon":"","categories":[],"schema_version":"0.1.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-imc.IMCWidget","title":"Create Imaging Mass Cytometry","python_name":"napari_imc:IMCWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-imc.get_reader","title":"Read Imaging Mass Cytometry (IMC) files using readimc","python_name":"napari_imc:napari_get_reader","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"napari-imc.get_reader","filename_patterns":["*.mcd","*.txt"],"accepts_directories":false}],"writers":null,"widgets":[{"command":"napari-imc.IMCWidget","display_name":"Imaging Mass Cytometry","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-imc","version":"0.6.5","dynamic":null,"platform":null,"supported_platform":null,"summary":"Imaging Mass Cytometry (IMC) file type support for napari","description":"# napari-imc\n\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-imc)](https://napari-hub.org/plugins/napari-imc)\n[![PyPI](https://img.shields.io/pypi/v/napari-imc.svg?color=green)](https://pypi.org/project/napari-imc)\n[![License](https://img.shields.io/pypi/l/napari-imc.svg?color=green)](https://github.com/BodenmillerGroup/napari-imc/raw/main/LICENSE)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-imc.svg?color=green)](https://python.org)\n[![Issues](https://img.shields.io/github/issues/BodenmillerGroup/napari-imc)](https://github.com/BodenmillerGroup/napari-imc/issues)\n[![Pull requests](https://img.shields.io/github/issues-pr/BodenmillerGroup/napari-imc)](https://github.com/BodenmillerGroup/napari-imc/pulls)\n\nImaging Mass Cytometry (IMC) file type support for napari\n\nLoad panoramas and multi-channel acquisitions co-registered within the machine's coordinate system from Fluidigm TXT/MCD files\n\n## Installation\n\nYou can install napari-imc via [pip](https://pypi.org/project/pip/):\n\n    pip install napari-imc\n    \nAlternatively, you can install napari-imc via [conda](https://conda.io/):\n\n    conda install -c conda-forge napari-imc\n    \nFor example, to install napari and napari-imc in a fresh conda environment using pip:\n\n    conda create -n napari-imc python=3.9\n    conda activate napari-imc\n    pip install \"napari[all]\" napari-imc\n    \n## Usage\n\nSimply open your Fluidigm TXT/MCD file using napari.\n\n## Authors\n\nCreated and maintained by Jonas Windhager [jonas.windhager@uzh.ch](mailto:jonas.windhager@uzh.ch)\n\n## Citation\n\nPlease cite the following paper when using napari-imc in your work:\n\n> Windhager J, Bodenmiller B, Eling N (2021). An end-to-end workflow for multiplexed image processing and analysis. bioRxiv. doi: https://doi.org/10.1101/2021.11.12.468357.\n\n    @article{Windhager2021,\n      author = {Windhager, Jonas and Bodenmiller, Bernd and Eling, Nils},\n      title = {An end-to-end workflow for multiplexed image processing and analysis},\n      year = {2021},\n      doi = {10.1101/2021.11.12.468357},\n      URL = {https://www.biorxiv.org/content/early/2021/11/13/2021.11.12.468357},\n      journal = {bioRxiv}\n    }\n\n## Contributing\n\n[Contributing](https://github.com/BodenmillerGroup/napari-imc/blob/main/CONTRIBUTING.md)\n\n## Changelog\n\n[Changelog](https://github.com/BodenmillerGroup/napari-imc/blob/main/CHANGELOG.md)\n\n## License\n\n[MIT](https://github.com/BodenmillerGroup/napari-imc/blob/main/LICENSE.md)\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/BodenmillerGroup/napari-imc","download_url":null,"author":"Jonas Windhager","author_email":"jonas.windhager@uzh.ch","maintainer":null,"maintainer_email":null,"license":"MIT","classifier":["Development Status :: 4 - Beta","Intended Audience :: Science/Research","Framework :: napari","Topic :: Scientific/Engineering :: Bio-Informatics","Topic :: Scientific/Engineering :: Image Processing","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Operating System :: OS Independent","License :: OSI Approved :: MIT License"],"requires_dist":["numpy","qtpy","readimc","superqt"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/BodenmillerGroup/napari-imc/issues","Documentation, https://github.com/BodenmillerGroup/napari-imc#README.md","Source Code, https://github.com/BodenmillerGroup/napari-imc","User Support, https://github.com/BodenmillerGroup/napari-imc/issues"],"provides_extra":null,"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}