{"name":"napari-molecule-reader","display_name":"napari molecule reader","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-molecule-reader.get_reader","title":"Open data with napari molecule reader","python_name":"napari_molecule_reader._reader:get_reader","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"napari-molecule-reader.get_reader","filename_patterns":["*.pdb","*.cif"],"accepts_directories":false}],"writers":null,"widgets":null,"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-molecule-reader","version":"0.1.2","dynamic":null,"platform":["UNKNOWN"],"supported_platform":null,"summary":"A napari plugin that read molecular structure files.","description":"# napari-molecule-reader\n\n[![License](https://img.shields.io/pypi/l/napari-molecule-reader.svg?color=green)](https://github.com/brisvag/napari-molecule-reader/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-molecule-reader.svg?color=green)](https://pypi.org/project/napari-molecule-reader)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-molecule-reader.svg?color=green)](https://python.org)\n[![tests](https://github.com/brisvag/napari-molecule-reader/workflows/tests/badge.svg)](https://github.com/brisvag/napari-molecule-reader/actions)\n[![codecov](https://codecov.io/gh/brisvag/napari-molecule-reader/branch/main/graph/badge.svg)](https://codecov.io/gh/brisvag/napari-molecule-reader)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-molecule-reader)](https://napari-hub.org/plugins/napari-molecule-reader)\n\nA napari plugin that read molecular structure files. It reads PDB and MMCIF files using [`atomium`](https://github.com/samirelanduk/atomium), expanding molecular assemblies to a full visualization. Data is loaded into napari as `Points` for ball representation and `Vectors` for stick representation. If multiple models or assemblies are detected, they will be loaded as separate objects.\n\nhttps://user-images.githubusercontent.com/23482191/150109390-bd7fb3b4-79b4-43da-aafc-20921714df25.mp4\n\nTODO list:\n- [] handle alternate locations (i.e: different conformations in the same pdb model)\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/plugins/stable/index.html\n-->\n\n## Installation\n\nYou can install `napari-molecule-reader` via [pip]:\n\n    pip install napari-molecule-reader\n\n\n\nTo install latest development version :\n\n    pip install git+https://github.com/brisvag/napari-molecule-reader.git\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-molecule-reader\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/brisvag/napari-molecule-reader/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n\n\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/brisvag/napari-molecule-reader","download_url":null,"author":"Lorenzo Gaifas","author_email":"brisvag@gmail.com","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 2 - Pre-Alpha","Intended Audience :: Developers","Framework :: napari","Topic :: Software Development :: Testing","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.7","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Operating System :: OS Independent","License :: OSI Approved :: BSD License"],"requires_dist":["numpy","pandas","scipy","atomium"],"requires_python":">=3.7","requires_external":null,"project_url":["Bug Tracker, https://github.com/brisvag/napari-molecule-reader/issues","Documentation, https://github.com/brisvag/napari-molecule-reader#README.md","Source Code, https://github.com/brisvag/napari-molecule-reader","User Support, https://github.com/brisvag/napari-molecule-reader/issues"],"provides_extra":null,"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}