{"name":"napari-nlm","display_name":"napari NLM","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-nlm.make_sample_data_2d","title":"Load sample data from napari NLM","python_name":"napari_nlm._sample_data:make_sample_data_2d","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-nlm.make_sample_data_3d","title":"Load sample data from napari NLM","python_name":"napari_nlm._sample_data:make_sample_data_3d","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-nlm.denoise_nlm","title":"denoise_nlm","python_name":"napari_nlm._widget:denoise_nlm","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-nlm.denoise_nlm","display_name":"denoise_nlm","autogenerate":true}],"sample_data":[{"command":"napari-nlm.make_sample_data_2d","key":"unique_id.1","display_name":"2D (noisy bricks)"},{"command":"napari-nlm.make_sample_data_3d","key":"unique_id.2","display_name":"3D (noisy cells)"}],"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-nlm","version":"0.0.4","dynamic":null,"platform":null,"supported_platform":null,"summary":"NLM (non local means) denoising","description":"# napari-nlm\n\n[![License BSD-3](https://img.shields.io/pypi/l/napari-nlm.svg)](https://github.com/maweigert/napari-nlm/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-nlm.svg)](https://pypi.org/project/napari-nlm)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-nlm.svg)](https://python.org)\n[![tests](https://github.com/maweigert/napari-nlm/workflows/tests/badge.svg)](https://github.com/maweigert/napari-nlm/actions)\n[![codecov](https://codecov.io/gh/maweigert/napari-nlm/branch/main/graph/badge.svg)](https://codecov.io/gh/maweigert/napari-nlm)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-nlm)](https://napari-hub.org/plugins/napari-nlm)\n\n----------------------------------\n\n\nGPU accelerated non local means (NLM) denoising plugin for napari (WIP)\n\n* currently only supports single-channel 2D or 3D images\n* requires a OpenCL capable GPU\n\n![Screenshot](images/screenshot.jpg)\n\n\n## Installation\n\nYou can install `napari-nlm` via [pip]:\n\n    pip install napari-nlm\n\n## Usage\n\n1. Open example image `Open Sample > napari-nlm: noisy bricks`\n2. Adjust parameters \n   * `sigma`: denoising strength (the larger sigma, the greater the smoothing)\n   * `patch_radius`: size of local patches, 2 or 3 is a good default\n   * `search_radius`: size of search area around each pixel to find similar patches, 7-11 is a good default\n3. Denoise by pressing `run`\n\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-nlm\" is free and open source software\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/maweigert/napari-nlm","download_url":null,"author":"Martin Weigert","author_email":"marweigert@gmail.com","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["numpy","magicgui","qtpy","pyopencl (==2022.1.5)","gputools","scikit-image","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/maweigert/napari-nlm/issues","Documentation, https://github.com/maweigert/napari-nlm#README.md","Source Code, https://github.com/maweigert/napari-nlm","User Support, https://github.com/maweigert/napari-nlm/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}