{"name":"napari-open-ctc","display_name":"Open CTC data","visibility":"public","icon":"","categories":["Visualization"],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-open-ctc.get_reader","title":"Open CTC TRA/RES data","python_name":"napari_open_ctc._reader:napari_get_reader","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"napari-open-ctc.get_reader","filename_patterns":["TRA","*RES"],"accepts_directories":true}],"writers":null,"widgets":null,"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-open-ctc","version":"0.1.2","dynamic":null,"platform":null,"supported_platform":null,"summary":"\"Drag and drop annotations/results in the Cell Tracking Challenge (CTC) format into napari.\"","description":"# napari-open-ctc\n\n[![PyPI](https://img.shields.io/pypi/v/napari-open-ctc.svg?color=green)](https://pypi.org/project/napari-open-ctc)\n[![tests](https://github.com/bentaculum/napari-open-ctc/workflows/tests/badge.svg)](https://github.com/bentaculum/napari-open-ctc/actions)\n[![codecov](https://codecov.io/gh/bentaculum/napari-open-ctc/branch/main/graph/badge.svg)](https://codecov.io/gh/bentaculum/napari-open-ctc)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-open-ctc)](https://napari-hub.org/plugins/napari-open-ctc)\n\nDrag and drop annotations/results in the [Cell Tracking Challenge (CTC) format](https://celltrackingchallenge.net) into napari.\n\nWorks for `TRA`, `RES`, etc. folders, which contain a time sequence of segmentations in `tiff` format, and a corresponding tracklet file `*.txt`.\n\nhttps://github.com/bentaculum/napari-open-ctc/assets/8866751/197c9ea2-4115-4829-851a-4b77eb843bf2\n\n\n## Installation\n\nYou can install `napari-open-ctc` via [pip]:\n\n    pip install napari-open-ctc\n\n\n\nTo install latest development version :\n\n\n    pip install git+https://github.com/bentaculum/napari-open-ctc.git\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox].\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n`napari-open-ctc` is free and open source software.\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/bentaculum/napari-open-ctc/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/bentaculum/napari-open-ctc","download_url":null,"author":"Benjamin Gallusser","author_email":"benjamin.gallusser@epfl.ch","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 3 - Alpha","Framework :: napari","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.11","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["napari","numpy","scikit-image","tifffile","pandas","imagecodecs","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'"],"requires_python":">=3.9","requires_external":null,"project_url":["Bug Tracker, https://github.com/bentaculum/napari-open-ctc/issues","Documentation, https://github.com/bentaculum/napari-open-ctc#README.md","Source Code, https://github.com/bentaculum/napari-open-ctc","User Support, https://github.com/bentaculum/napari-open-ctc/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}