{"name":"napari-pssr","display_name":"napari PSSR","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-pssr.make_pssr_widget","title":"Make model widget","python_name":"napari_pssr.widgets.pssr:ModelWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-pssr.lr_em","title":"Load low res em for pssr","python_name":"napari_pssr.sample_data:lr_em","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-pssr.hr_em","title":"Load high res em for pssr comparison","python_name":"napari_pssr.sample_data:hr_em","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-pssr.lr_large","title":"Load low res em for large image","python_name":"napari_pssr.sample_data:lr_large","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-pssr.make_pssr_widget","display_name":"PSSR Widget","autogenerate":false}],"sample_data":[{"command":"napari-pssr.lr_em","key":"lr_em.0","display_name":"8nm EM"},{"command":"napari-pssr.hr_em","key":"hr_em.0","display_name":"2nm EM"},{"command":"napari-pssr.lr_large","key":"lr_em.1","display_name":"large 8nm EM"}],"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-pssr","version":"0.1","dynamic":null,"platform":null,"supported_platform":null,"summary":"A plugin for training and applying pssr","description":"# napari-pssr\n\n[![License](https://img.shields.io/pypi/l/napari-pssr.svg?color=green)](https://github.com/pattonw/napari-pssr/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-pssr.svg?color=green)](https://pypi.org/project/napari-pssr)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-pssr.svg?color=green)](https://python.org)\n[![tests](https://github.com/pattonw/napari-pssr/workflows/tests/badge.svg)](https://github.com/pattonw/napari-pssr/actions)\n[![codecov](https://codecov.io/gh/pattonw/napari-pssr/branch/main/graph/badge.svg)](https://codecov.io/gh/pattonw/napari-pssr)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-pssr)](https://napari-hub.org/plugins/napari-pssr)\n\nA plugin for training and applying pssr\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n\n\n## Installation\n\nYou can install `napari-pssr` via [pip]:\n\n pip install napari-pssr\n\nSome libraries need to be updated to the most recent version to get all features.\nThese will be updated once they are released on pypi\n \n pip install git+https://github.com/bioimage-io/core-bioimage-io-python\",\n pip install git+https://github.com/funkey/gunpowder.git@patch-1.2.3\",\n\n\nTo install latest development version :\n\n pip install git+https://github.com/pattonw/napari-pssr.git\n\n## Model download\n\nA sample model can be downloaded from `https://github.com/pattonw/model-specs/tree/main/pssr`. This model comes with some restrictive dependencies. To use follow these steps.\n1) install this plugin following the directions provided above\n2) install bioimageio.core via `pip install bioimageio.core` or `conda install -c conda-forge bioimageio.core`\n3) `pip install fastai==1.0.55 tifffile libtiff czifile scikit-image`\n4) `pip uninstall torch torchvision` (may need multiple runs)\n5) `conda install pytorch==1.1.0 torchvision==0.3.0 cudatoolkit=10.0 -c pytorch`\n6) `pip install pillow==6.1.0`\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [MIT] license,\n\"napari-pssr\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/pattonw/napari-pssr/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/pattonw/napari-pssr","download_url":null,"author":"William Patton","author_email":"will.hunter.patton@gmail.com","maintainer":null,"maintainer_email":null,"license":"MIT","classifier":["Development Status :: 2 - Pre-Alpha","Intended Audience :: Developers","Framework :: napari","Topic :: Software Development :: Testing","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.7","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Operating System :: OS Independent","License :: OSI Approved :: MIT License"],"requires_dist":["numpy","zarr","magicgui","bioimageio.core","gunpowder","matplotlib","torch","napari"],"requires_python":">=3.7","requires_external":null,"project_url":["Bug Tracker, https://github.com/pattonw/napari-pssr/issues","Documentation, https://github.com/pattonw/napari-pssr#README.md","Source Code, https://github.com/pattonw/napari-pssr","User Support, https://github.com/pattonw/napari-pssr/issues"],"provides_extra":null,"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}