{"name":"napari-tiledb-bioimg","display_name":"napari TileDB bioimaging","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-tiledb-bioimg.get_reader","title":"TileDB Reader","python_name":"napari_tiledb_bioimg._reader:napari_get_reader","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-tiledb-bioimg.write_image_lossless","title":"Save image data with TileDB BioImaging Napari Plugin (lossless)","python_name":"napari_tiledb_bioimg._writer:napari_write_image_lossless","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-tiledb-bioimg.write_image_lossy","title":"Save image data with TileDB BioImaging Napari Plugin (lossy)","python_name":"napari_tiledb_bioimg._writer:napari_write_image_lossy","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-tiledb-bioimg.make_qwidget","title":"Make TileDBWidget","python_name":"napari_tiledb_bioimg._widget:TileDBWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":[{"command":"napari-tiledb-bioimg.get_reader","filename_patterns":["tiledb://*","s3://*","*.tdb","*.tiledb"],"accepts_directories":true}],"writers":[{"command":"napari-tiledb-bioimg.write_image_lossless","layer_types":["image"],"filename_extensions":[],"display_name":"lossless"},{"command":"napari-tiledb-bioimg.write_image_lossy","layer_types":["image"],"filename_extensions":[],"display_name":"lossy"}],"widgets":[{"command":"napari-tiledb-bioimg.make_qwidget","display_name":"TileDB","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-tiledb-bioimg","version":"0.0.1","dynamic":null,"platform":null,"supported_platform":null,"summary":"Support reading and writing TileDB-Bioimaging image arrays within Napari","description":"# napari-tiledb-bioimg\n\n[![License MIT](https://img.shields.io/pypi/l/napari-tiledb-bioimg.svg?color=green)](https://github.com/TileDB-Inc/napari-tiledb-bioimg/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-tiledb-bioimg.svg?color=green)](https://pypi.org/project/napari-tiledb-bioimg)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-tiledb-bioimg.svg?color=green)](https://python.org)\n[![tests](https://github.com/TileDB-Inc/napari-tiledb-bioimg/workflows/tests/badge.svg)](https://github.com/TileDB-Inc/napari-tiledb-bioimg/actions)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-tiledb-bioimg)](https://napari-hub.org/plugins/napari-tiledb-bioimg)\n\nThis plugin supports reading and writing TileDB-BioImaging multi-resolution arrays within Napari.\n\n----------------------------------\n\n## Demo\n\nhttps://github.com/TileDB-Inc/napari-tiledb-bioimg/assets/327706/b408d634-6ad0-4160-8571-18cf8e37b4cc\n\n## Installation\n\n[pending PyPI release!] You can install `napari-tiledb-bioimg` via [pip]:\n\n    pip install napari-tiledb-bioimg\n\n## Quickstart\n\nAfter [ingesting data using `tiledb-bioimg`](https://github.com/TileDB-Inc/TileDB-BioImaging#examples), then:\n\n- Local images can be loaded using Napari's `File -> Open Folder`, and selecting the TileDB array folder. Choose the `napari-tiledb-bioimg` plugin, if prompted.\n\n- Remote arrays (S3, TileDB Cloud) may be loaded using either the `napari` CLI command:\n\n```\nnapari --plugin napari-tiledb-bioimg s3://<bucket>/<path/to/tiledb_array>\n```\n\n- ... or the Napari viewer load command within the Python prompt:\n\n```\n# Within a Napari-enabled Python/IPython prompt, run:\nimport napari\nviewer = napari.Viewer()\n\nviewer.open(\"tiledb://<namespace>/<array name or UUID>\", plugin=\"napari-tiledb-bioimg\")\n```\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with tox or pytest.\n\n### Installation from git:\n\n```\npip install git+https://github.com/TileDB-Inc/napari-tiledb-bioimg.git\n```\n\n## License\n\nDistributed under the terms of the [MIT] license,\n\"napari-tiledb-bioimg\" is free and open source software.\n\n## Issues\n\nIf you encounter any problems, please [file an issue](https://github.com/TileDB-Inc/napari-tiledb-bioimg/issues/new) along with a detailed description.\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/TileDB-Inc/napari-tiledb-bioimg","download_url":null,"author":"TileDB, Inc.","author_email":"help@tiledb.io","maintainer":null,"maintainer_email":null,"license":"MIT","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: MIT License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["dask","tiledb-bioimg (>=0.2.1)","tiledb-cloud ; extra == 'cloud'","napari ; extra == 'testing'","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":null,"provides_extra":["cloud","testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}