{"name":"napari-tomoslice","display_name":"napari-tomoslice","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-tomoslice.TomoSliceWidget","title":"TomoSliceWidget","python_name":"napari_tomoslice._qt.tomoslice:TomoSliceWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-tomoslice.TomoSliceWidget","display_name":"TomoSliceWidget","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-tomoslice","version":"0.0.7","dynamic":null,"platform":["UNKNOWN"],"supported_platform":null,"summary":"A napari plugin for interacting with electron cryotomograms","description":"# napari-tomoslice\n\n[![License](https://img.shields.io/pypi/l/napari-tomoslice.svg?color=green)](https://github.com/alisterburt/napari-tomoslice/raw/master/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-tomoslice.svg?color=green)](https://pypi.org/project/napari-tomoslice)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-tomoslice.svg?color=green)](https://python.org)\n[![tests](https://github.com/alisterburt/napari-tomoslice/workflows/tests/badge.svg)](https://github.com/alisterburt/napari-tomoslice/actions)\n[![codecov](https://codecov.io/gh/alisterburt/napari-tomoslice/branch/master/graph/badge.svg)](https://codecov.io/gh/alisterburt/napari-tomoslice)\n\nA napari plugin for visualising and interacting with electron cryotomograms.\n\n\n## Installation\n\nYou can install `napari-tomoslice` via [pip]:\n\n    pip install napari-tomoslice\n\n## Usage\n\nThis plugin provides a user interface for opening electron cryotomograms in \nnapari as both volumes and slices through volumes.\n\n![demo](https://user-images.githubusercontent.com/7307488/138575305-b05c4735-9c03-4629-bfb0-9612ea8f26fd.gif)\n\nThe plugin can be opened from the `plugins` menu in napari, or with \n`napari-tomoslice` at the command line.\n\n![plugins-menu](https://user-images.githubusercontent.com/7307488/138575015-00ea78d9-02c1-44bc-9034-0c0a7fa8d973.png)\n\n```yaml\nUsage: napari-tomoslice [TOMOGRAM_FILE]\n\n  An interactive tomogram slice viewer in napari.\n\n  Controls: \n  x/y/z - align normal vector along x/y/z axis \n  click and drag - shift plane along its normal vector\n  alt-click - add point on plane (if points layer is active)\n  o - align plane normal to view direction\n  [] - decrease/increase plane thickness\n\nArguments:\n  [TOMOGRAM_FILE]\n\nOptions:\n  --help                          Show this message and exit.\n\n```\n\n## Contributing\n\nContributions are very welcome. \n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-tomoslice\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/alisterburt/napari-tomoslice/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n\n\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/alisterburt/napari-tomoslice","download_url":null,"author":"Alister Burt","author_email":"alisterburt@gmail.com","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 2 - Pre-Alpha","Intended Audience :: Developers","Framework :: napari","Topic :: Software Development :: Testing","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.7","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Operating System :: OS Independent","License :: OSI Approved :: BSD License"],"requires_dist":["napari-plugin-engine (>=0.1.4)","numpy","napari (==0.4.12)","mrcfile","typer"],"requires_python":">=3.7","requires_external":null,"project_url":["Bug Tracker, https://github.com/alisterburt/napari-tomoslice/issues","Documentation, https://github.com/alisterburt/napari-tomoslice#README.md","Source Code, https://github.com/alisterburt/napari-tomoslice","User Support, https://github.com/alisterburt/napari-tomoslice/issues"],"provides_extra":null,"provides_dist":null,"obsoletes_dist":null},"npe1_shim":true}