{"name":"napari-trackpy","display_name":"Particle tracking","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-trackpy.xyz_tracking","title":"XYZ particle tracking","python_name":"napari_trackpy._widget:XYZWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-trackpy.write_points_xyzfile","title":"Save points layer to xyz file","python_name":"napari_trackpy._writer:xyz_file_writer","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":[{"command":"napari-trackpy.write_points_xyzfile","layer_types":["points"],"filename_extensions":[".xyz"],"display_name":"XYZ format"}],"widgets":[{"command":"napari-trackpy.xyz_tracking","display_name":"XYZ particle tracking","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-trackpy","version":"0.3.0","dynamic":null,"platform":null,"supported_platform":null,"summary":"Plugin to do trackpy particle tracking on microscopy data within napari","description":"# napari-trackpy\n\n[![License MIT](https://img.shields.io/pypi/l/napari-trackpy.svg?color=green)](https://github.com/rhoitink/napari-trackpy/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-trackpy.svg?color=green)](https://pypi.org/project/napari-trackpy)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-trackpy.svg?color=green)](https://python.org)\n[![tests](https://github.com/rhoitink/napari-trackpy/workflows/tests/badge.svg)](https://github.com/rhoitink/napari-trackpy/actions)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-trackpy)](https://napari-hub.org/plugins/napari-trackpy)\n\nPlugin to do [trackpy] particle tracking on 3D microscopy data within [napari]. Currently only tracking of XYZ data is implemented.\n\n## Installation\n\nYou can install `napari-trackpy` via [pip]:\n\n    pip install napari-trackpy\n\nTo install latest development version :\n\n    pip install git+https://github.com/rhoitink/napari-trackpy.git\n\n## How to use this plugin?\n* Load your XYZ data (using [napari-aicsimageio])\n* Make sure to split channels into different layers, such that the layer only contains 3D (XYZ) data\n* Open the widget for the tracking plugin via `Plugins` > `XYZ particle tracking`\n* Optimize the tracking settings for your dataset, for an extensive description of the settings, visit [this tutorial](http://soft-matter.github.io/trackpy/dev/tutorial/tracking-3d.html)\n* Save your tracking data into the `.xyz` file format using `Ctrl`+`S` (on the points layer) or via the menu `File` > `Save Selected Layer(s)...`\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox].\n\n## License\n\nDistributed under the terms of the [MIT] license,\n\"napari-trackpy\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[trackpy]: https://github.com/soft-matter/trackpy\n[napari-aicsimageio]: https://github.com/AllenCellModeling/napari-aicsimageio\n[MIT]: http://opensource.org/licenses/MIT\n\n[file an issue]: https://github.com/rhoitink/napari-trackpy/issues\n\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/rhoitink/napari-trackpy","download_url":null,"author":"Roy Hoitink","author_email":"L.D.Hoitink@uu.nl","maintainer":null,"maintainer_email":null,"license":"MIT","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: MIT License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.11","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["numpy","magicgui","qtpy","napari","napari-aicsimageio","readlif","trackpy","matplotlib","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/rhoitink/napari-trackpy/issues","Documentation, https://github.com/rhoitink/napari-trackpy#README.md","Source Code, https://github.com/rhoitink/napari-trackpy","User Support, https://github.com/rhoitink/napari-trackpy/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}