{"name":"napari-tyssue","display_name":"napari tyssue","visibility":"public","icon":"","categories":[],"schema_version":"0.2.0","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-tyssue.make_apoptosis_widget","title":"napari-tyssue apoptosis demo simulation","python_name":"napari_tyssue.apoptosis:ApoptosisWidget","short_title":null,"category":null,"icon":null,"enablement":null},{"id":"napari-tyssue.make_invagination_widget","title":"napari-tyssue invagination demo simulation","python_name":"napari_tyssue.invagination:InvaginationWidget","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-tyssue.make_apoptosis_widget","display_name":"napari-tyssue apoptosis","autogenerate":false},{"command":"napari-tyssue.make_invagination_widget","display_name":"napari-tyssue invagination","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-tyssue","version":"0.1.2","dynamic":null,"platform":null,"supported_platform":null,"summary":"A napari plugin for use with the tyssue library","description":"# napari-tyssue\n\n[![License BSD-3](https://img.shields.io/pypi/l/napari-tyssue.svg?color=green)](https://github.com/kephale/napari-tyssue/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-tyssue.svg?color=green)](https://pypi.org/project/napari-tyssue)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-tyssue.svg?color=green)](https://python.org)\n[![tests](https://github.com/kephale/napari-tyssue/workflows/tests/badge.svg)](https://github.com/kephale/napari-tyssue/actions)\n[![codecov](https://codecov.io/gh/kephale/napari-tyssue/branch/main/graph/badge.svg)](https://codecov.io/gh/kephale/napari-tyssue)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-tyssue)](https://napari-hub.org/plugins/napari-tyssue)\n\nA napari plugin for use with the tyssue library\n\n![napari-tyssue demo of apoptosis model](https://github.com/kephale/napari-tyssue/raw/main/assets/napari_tyssue_apoptosis.gif)\n\n\nExample video of apoptosis demo simulation created based on the\napoptosis demo from\n[tyssue-demo](https://github.com/DamCB/tyssue-demo).\n\n![napari-tyssue demo of invagination model](https://github.com/kephale/napari-tyssue/raw/main/assets/napari_tyssue_invagination_3x.gif)\n\n\nExample video of apoptosis demo simulation created based on work under\nrevision by Suzanne group at U Toulouse entitled\n\"Epithelio-mesenchymal transition generates an apico-basal driving\nforce required for tissue remodeling\" [available here](https://github.com/DamCB/invagination).\n\n----------------------------------\n\nThis [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/cookiecutter-napari-plugin#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/stable/plugins/index.html\n-->\n\n## Installation\n\nYou are better off using conda. You will need pytables, and ideally CGAL.\n\nYou can install `napari-tyssue` via [pip]:\n\n    pip install napari-tyssue\n\n\n\nTo install latest development version :\n\n    pip install git+https://github.com/kephale/napari-tyssue.git\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-tyssue\" is free and open source software\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\n\n[napari]: https://github.com/napari/napari\n[Cookiecutter]: https://github.com/audreyr/cookiecutter\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin\n\n[file an issue]: https://github.com/kephale/napari-tyssue/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":"https://github.com/kephale/napari-tyssue","download_url":null,"author":"Kyle Harrington","author_email":"czi@kyleharrington.com","maintainer":null,"maintainer_email":null,"license":"BSD-3-Clause","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["numpy","magicgui","qtpy","tyssue","quantities","pooch","tables","imageio-ffmpeg","invagination (==0.0.2)","tox ; extra == 'testing'","pytest ; extra == 'testing'","pytest-cov ; extra == 'testing'","pytest-qt ; extra == 'testing'","napari ; extra == 'testing'","pyqt5 ; extra == 'testing'"],"requires_python":">=3.8","requires_external":null,"project_url":["Bug Tracker, https://github.com/kephale/napari-tyssue/issues","Documentation, https://github.com/kephale/napari-tyssue#README.md","Source Code, https://github.com/kephale/napari-tyssue","User Support, https://github.com/kephale/napari-tyssue/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}